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Note that the annotation guideline used to annotate the training set of tmChem is very similar to the one used to annotate the two CEMP patent corpora.
Finally, the homolog annotations were used to annotate the uncharacterized genes.
ANNOVAR [ 21] was used to annotate the SNVs with gene annotations downloaded from the UCSC browser [ 23] (http://www.genome.ucsc.edu/).ucsc.edu/
The RAST annotation server [25] was used to annotate the plasmid genomes.
The Maker annotation pipeline [ 9] was used to annotate the A. apis genome [ 7].
NONCODE 2016 was used to annotate the lncRNAs.
Finally labels and lines are used to annotate the plot.
"LocusAnnotator" was used to annotate the KLK locus sequence with gene and polymorphism features.
GO analysis was further used to annotate the difference in four comparison groups.
The database was then used to annotate the data from the experiments.
The Blast program "blastall" was downloaded from NCBI and used to annotate the sequences.
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