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First, a sequence aligner is used to align the reads to the reference genome.
ClustalW [ 176] and Treeview software [ 177] were used to align sequences and visualise alignments.
The protein alignments were then used to align the nucleotide sequences in MacClade 4.5.
Unspliced aligners may be used to align reads to a reference transcriptome or a reference genome.
(c) Section alignment reveals the blood vessels used to align the 2P images.
Here, local minimum LFP values were used to align events.
Standard protocols described in detail in the Reconstruct manual were used to align the images.
The large AAA subdomain of RPT1 was used to align the two AAA-ring structures together.
The scanalyze software package used to align and merge range data in the Digital Michelangelo Project.
The HMG like side chain, a common moiety of statins, was used to align the molecules.
The most potent compound, 33 (KYS05090) was used to align the molecules.
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