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The ratio between these two is equal to the approximate fraction of true-positives that act in cis (this follows from the fact that cis-QTL are a subset of all QTL, we used the same thresholds for cis and trans-hits, and we have estimates for the number of true positives of each).
We used the same thresholds as above to identify markers showing evidence of selection.
3 We used the same thresholds for the reference period and future period to isolate the effect of climate change.
We used the same thresholds with a previously published method [ 5] and considered genes with log2-fold changes greater than 2 and less than 0.2 as differentially expressed (true positives) and non-differentially expressed (true negatives) respectively.
Of note, the Poisson model used the same thresholds and filters as vipR: the error rate was estimated using the 90thpercentt quantile, and for the required maximal MAF the default setting was used (resulting in ).
This may have slight implications on the power of our study, since we used the same thresholds for binary traits in both sexes, but this is unlikely to have a major effect on study results and conclusions.
Similar(52)
We therefore used the same threshold for the CASMI challenge data set.
For a given stealthy scan scenario, they were able to significantly increase detection accuracy with their probabilistic threshold approach versus a naïve scheme that used the same threshold.
We averaged the ratios from duplicate microarray hybridizations and used the same threshold as for HeLa cells to define the target promoters occupied by Myc in foreskin fibroblasts.
We used the same threshold of evidence against the null hypothesis (p-value< = 0.01) and identified more enriched KEGG pathways for switch-like genes as seen in Table 5 than that study [77].
We used the same threshold levels for SRM.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com