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We used the interaction data as described above.
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To make them truly robust, companies like MindTouch are building services that use the interaction data to weight answers based on what is most helpful.
NCBI Gene records not only associate each gene with a set of reference sequences, but also include a wealth of additional data (e.g. list of synonyms) and links to other databases such as Gene Ontology (33) that are important when using the interaction data set in practice.
To assure the reliability of the protein-protein interactions, we used only the interaction data that was supported by experimental evidence and not the optimized interactions.
The linear mixed-effects model of female preferences was run first on data collected during the No-Interaction tests conducted in the upper compartment of the mate choice apparatus and secondly using the Interaction test data from the lower compartment.
Note that we only used the negative interaction data from the semi-supervised learning for the training sets, while our test sets contained only experimentally verified positive and negative interaction data.
To identify potential SL interactors that are highly connected to CIN genes that are somatically mutated in CRC (e.g., RAD54B), we used the yeast interaction data available in BioGRID.
Table 2 gives the results of factors included in the final linear model using the MIPS interaction data [ 12] and the four expression profiles by stepwise selection with AIC.
Two datasets describing the yeast interactome were studied: the first contained the interaction data used by Kelley and Ideker (KI) in [7], whose synthetic-lethality (SL) network we denote by G.
aData set refers to the interaction data used to imply the function of the protein.
To do so, we collected the interaction data used in the article by Kim et al., 2011.
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