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We used the default setting of the program and filtered out all probes in which the temporal profile was always within 2 fold of expression from the referent group as our sample size does not allow reliable estimate of small effects [31].
For the Beagle method, we used the default setting in the software.
We used the default setting as described in Becher et al., altering the landscape as explained below.
The mammalian biological dataset has a large number of genes that contain all the species, so we used the default setting for ASTRAL.
We used the default setting of 100 for the ECR (evolutionary conserved region) length, the minimum amount of base pairs that have to align for similarity to register on the histogram, and 50percentt for the ECR similarity.
We used the default setting for Markov chain Monte Carlo analyses (100,000 cycles in which the Markov chain was sampled 10,000 times every 100th cycle after burn in).
Similar(52)
Then, the functional linkage could be generated using the default setting.
These three sets were input into GeneMANIA (http://www.genemania.org) [ 13, 14] individually using the default setting.
Only two out of ten free available DICOM de-identification toolkits had a success rate of de-identification higher than 90%% using the default setting.
In our approach, we used the default set of the filters2 which were learned from 5000 patches.
Scanned images were analyzed by using the default setting of GCOS 1.4.
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used the default resolution
used the default output
used the default parameter
used the default value
used the default method
used the default transcript
used the default function
used the default choice
used the default gcc
used the microbeam setting
used the study setting
used the default set
used the default plant
used the default start
used the default strategy
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