Sentence examples for used model of evolution from inspiring English sources

As an option, it performs maximum likelihood estimation of model parameters prior to coevolution analysis, and supports a wide range of commonly used model of evolution, from Jukes-Cantor to General Time Reversible for nucleotides, and the Dayhoff and JTT models for proteins, using the dcmutt implementation [ 23].

However, phylogenetic inference from mitochondrial sequences may be complicated by a number of misleading factors such as compositional heterogeneity [ 29], strand asymmetry [ 30] and accelerated substitution rates, which violate the assumptions of the commonly used models of evolution.

With more sequences becoming available for conifer species [ 94], it will be possible to test for positive selection using models of evolution across a tree composed of three or more species.

The SMM model is the simplest and most widely used model of microsatellite evolution, but it may seem overly simplistic given the heterogeneous nature of human microsatellites (Chakraborty et al. 1997; Ellegren 2004).

When sufficiently pronounced, this phenomenon – called heterotachy – may produce artefactual phylogenetic reconstructions under the commonly used models of sequence evolution.

In other words, these types of analyses can help inform whether commonly used models of network evolution are plausible, as well as derive new ones.

We used models of codon evolution that allow for variation in d N/d S among codons [ 17] to perform LRTs for rate heterogeneity among amino acid sites and for positive selection.

The mass of Beta Pictoris has been determined by using models of stellar evolution and fitting them to the star's observed properties.

The TBC uses models of sequence evolution and performs resampling of sequence alignments, and does not require phylogenetic tree estimation.

If inferences of evolutionary processes are to be inferred from network topology, do the authors consider it feasible or desirable to use models of sequence evolution to provide evolutionary distances for weighting edges instead of BLAST scores?

BI analyses were performed in the program MrBayes 3.1.2 [ 47] using models of sequence evolution independently selected for 12S, ITS-1, and ITS-2 data sets by hierarchical likelihood ratio tests in MrModeltest 2.3 [ 48].