Sentence examples for used for tree construction from inspiring English sources

A total of 5274 SNPs were filtered in TASSEL GUI 5.2.37 using minor allele count (MAC) = 5, call rate = 0.8, resulting in 4940 filtered SNPs that were aligned and used for tree construction using the Geneious Tree Builder.

Sequences were compared for similarity, then clustered, aligned, and used for tree construction.

Concatenated alignments were analyzed and used for tree construction by the same methods as described earlier.

Only regions which completely overlapped with partial ORFs of O. viverrini ESTs were used for tree construction.

The relationships within this second group varied, depending on the method used for tree construction, and they were poorly supported.

Use of a single reference individual is at odds with traditional sequence-based phylogenetic analysis, where all pairwise comparisons among the taxa are used for tree construction.

DNA sequences used for tree constructions were aligned using on-line available ClustalX software (http://www.clustal.org/) [51] and the Modeltest 3.7 [52] was used to identify the best model of nucleotide substitutions.

The obtained alignment blocks were used for tree-construction by the neighbor-joining method.

RADICAL analyses were conducted on six data matrices (nt123, nt12, nt3, degen1, degen1-nt3, and AA) with ten random concatenation paths using the "–step 25" option, which adds 25 genes to each step in the concatenation path using RAxML for tree construction.

Because some pairs of clone sequences may be nonoverlapping (i.e. 500-base sequences at opposite end of the molecule) this file must be used with caution for tree construction.

(PPTX 1221 kb) Additional file 4: PhyML trees (Newick format), trimmed alignments used for phylogenetic tree construction, and original alignments for MCP, ATPase and pDNAP.