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The R software (Vienna, Austria) version 2.13.0 with "psych" package was used for this analyses.
Nonlinear models with quadratic [group × (time)] (time-centered) and/or exponential (e−time) terms to model nonlinearity with a first-order auto-regressive covariance structure was used for this analyses (SAS Proc Mixed), adjusted for clustering and heterogeneous variances.
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The code used for the analyses in this paper is available at https://github.com/lamda/RecNet.
Adult genotypes were used for these analyses, because this test assumes post-dispersal sampling (N = 14 females and 20 males).
The regions of the HA and NA segments used for the analyses in this study represented only about 10% of the whole influenza genome.
Stata 12.1 was used for the analyses in this paper [ 33].
A combination of paired t tests, McNemar tests and linear regression were used for the analyses of this matched dataset.
Additional file 3: Spread sheets with summaries of data compiled and used for the analyses in this study.
The full study included more questionnaires than the ones that were used for the analyses in this paper.
The datasets used for the analyses of this study are available in TreeBASE (Study Accession URL: http://purl.org/phylo/treebase/phylows/study/TB2 S15260?format=html).
The data compiled and used for the analyses in this article are summarized in the Additional file 4.
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