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The program MolProbity [22] was used for structure validation.
MolProbity was used for structure validation.
SFCHECK and PROCHECK (CCP4, 1994) were used for structure validation.
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Increasingly detailed rotamer libraries have been made since then by other research groups, with some used primarily for structure validation and others for homology modeling or protein design.
We also used PONDR-FIT [ 57] to evaluate unfolded regions on BACE1 sequence for structure validation.
In addition to improved curation, the use of structure validation filters for incorrect valance, atom labels, aromatic bonds, charges, stereochemistry and duplication was suggested.
While the RNA polymerase structure was used for internal validation the high RMSD also illustrates the relatively low precision of the method.
Finally, a process of the mechanical testing procedure for the whole system is presented which follows the classical building-block approach used for the validation of aeronautical structures.
This process resulted in Iridium, a highly trustworthy protein ligand structure database to be used for development and validation of structure-based design tools for drug discovery.
A principal component analysis (PCA) using singular value decomposition was used for ethnicity validation and tests of population structure.
Experimental results from a seven-storey planar frame structure in laboratory are also used for the validation.
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