Sentence examples for used for reference sequences from inspiring English sources

Two types of quality scores are used for reference sequences and mapped reads.

When possible, experimentally verified protein sequences were used for reference (i.e., in Anidu and Afumi, both proteins have been sequenced).

To predict the effect of the mutation underlying each SNP at the amino acid level, the best ORFs predicted by TransDecoder were used for as reference sequences for SNP detection using CLC Genomics Workbench, and then each SNP was determined as a synonymous or non-synonymous mutation.

The draft genome of Eucalyptus grandis (http://web.up.ac.za/eucagen) was used for reference-guided mapping of transcriptome sequencing reads.

The same read pools were then used for reference-guided assembly of high-copy sequences, the plastome and nuclear ribosomal DNA (nrDNA) cistrons (18S-5.8S-26S), using Alignreads.

The PDOC00028 alignment in the Prosite database (12328 sequences, http://au.expasy.org/prosite/) was used for the reference sequence representing the general C2H2 domain.

The remaining 25 Mbp of euchromatic gaps are often associated with segmental duplications and copy number variations between subjects used for the reference sequencing [ 30].

If functional alternative splicing was observed for a gene locus different ORF models were build which were used as reference sequences for the generation of ORF cloning and sequencing primers for entry clone sequence verification.

Assembled sequences more abundant than this cutoff were used as reference sequences for downstream proteomic analysis.

The mature sequences were used as reference sequences for each miRNA.

These were used as reference sequences for Local Blast using the 34,136 C. moewusii transcripts as query sequences.