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Ordinarily the tests used for insurance examinations are different from those used for parentage analysis.
The Table 6 provides the information of SSR loci used for parentage analysis and gene flow studies.
This analysis was conducted with the help of the GERUD software [38], as the software GERUD has been extensively used for parentage analysis in natural populations [28], [39], [40], [41], [42].
Twelve of these microsatellites are currently used for parentage controls in Austria for the Turopolje and Mangalica breeds.
Simple sequence repeats (SSRs) or microsatellites are widely used for parentage identification and stock management in family selection programs [ 31].
HD and 50k genotypes were used for parentage testing and to check the clustering quality of the HD genotypes by concordance analysis of the genotypes of the 1838 individuals genotyped on both chips.
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These include nine loci recommended by the 'Equine Genetics and Thoroughbred Parentage Testing Standardization Committee' of the International Society for Animal Genetics ISAGG) and eight additional loci commonly used for horse parentage testing and identification (Equine Gentypes Panel 1.1, Thermo Scientific).
A comprehensive review of 53 articles showed an average of seven microsatellites (ranging 3 to11) was used for plant parentage studies [ 51].
The raw data used for the parentage assignment analyses were archived for Serbezov et al., Molecular Ecology 19 3193 3205 and can be found at Dryad: doi: 10.5061/dryad.10.5061/dryad
It is therefore likely that the panel may be used for assignment of parentage.
The map consists of 5703 SNPs and 7 microsatellites (used initially for parentage assignment) in 24 linkage groups (LG) and spanning 1514 cM.
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