Sentence examples for used for multiple alignment from inspiring English sources

Four alignment strategies used Clustal W [48] and SATé [21], and MrBayes [49] were applied in this study: the whole-ITS Clustal W. Clustal W is used for multiple alignment and MrBayes is used for phylogenetic inference.

These sequences were used for multiple alignment (ClustalW with default settings) and consensus sequence calculation.

Progressive Mauve was used for multiple alignment among the 8 sequenced mitochondrial genomes in Brassicas[ 44].

The Clustal W program (http://www.ebi.ac.uk/clustalw/) was used for multiple alignment of CvHSP90.

Amino acid sequence corresponding to predicted genes was extracted and used for multiple alignment with proteins belonging to other baculoviruses.

Moreover, we found other 13 residues highly conserved (>95 %) in the Cucurbitaceae MLO families as well as in the other MLO homologs used for multiple alignment.

ClustalW [31] was used for multiple alignments with manual refinement.

ClustalW was used for multiple alignments and trees and bootstrap values were calculated using the Neighbor-Joining algorithm with default settings.

Protein weight matrix Gonnet, with Gap Opening 10 and Gap Extension 0.2 was used for multiple alignments that were manually refined in GeneDoc v.2.7.0 [34].

MUSCLE [ 17] was used for multiple alignments.

Program used for multiple alignments http://www.ch.embnet.org/.org/