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M and G in the 'Coordinate' column denote the geomagnetic and geographic coordinate systems, respectively, which are used for electrode alignment.
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The 5-μm-wide electrodes are used for the alignment of sparsely distributed nanotubes; the 3-μm-wide electrodes are used for the alignment of nanotube bundles and individual nanotubes.
Section 5 discusses the method used for permutation alignment.
FASTA is used for sequence alignment in 3dRPC.
TM7 was not used for the alignment.
Default parameters were used for the alignment.
CLustalW was used for nucleotide sequence alignment.
1610 sequence homologs were used for multi-sequence alignment (MSA).
A computer-based program, Gblocks, was used for alignment refinement.
Clustal Omega was used for multiple sequence alignment of sequences.
In those cases predicted sequences were used for alignment purposes.
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