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Samples are used for each simulation.
Table 4 Mean, Standard deviation and precision of BER estimation GM method, for SNR = 10 dB, at different number of samples are used for each simulation.
The same calculation set up was used for each simulation: to mimic proper solution conditions.
Then, two additional scenarios were performed as follow: DD/lbk: Demic diffusion with LBK dairy hypothesis (see discussion); The frequency of LC T*Pis transmitted from one population to the next (Figure 1 and Figure S1) and a combination of two different selection coefficients are used for each simulation: a higher s (1 3%) for the LBK group and a smaller s (0 0.8%) for all other populations.
A total of 1000 simulations were used for each simulation run.
The seeds used for each simulation were true random numbers provided by random.org via the package "random" [randomNumbers: [ 31].
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10,000 simulations were used for each situation.
In Arkhipov's virus capsid simulations, different time-steps are used for each capsid simulation.
Which setup is used for simulation experiments (simulation algorithm, algorithm settings, perturbations)?
As the Gillespie algorithm is used for simulations, at each simulation step the time to the next transition is drawn randomly from an exponential distribution with rate r (see above), where r is dependent on the number of active neurons and so changes at each simulation step.
The study was conducted under a detailed protocol and clearly lays out the assumptions that were made and the criteria that were used for each set of simulations [ 1].
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