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We compared GeneFriends to COXPRESSdb [ 9], which utilizes the more commonly used correlation value (Pearson or Fisher).
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Previous reports have used correlation values between replicates to assess the reproducibility of other amplification methods.
Secondly, expressional polymorphisms were analyzed using correlation values between the Dd2 and HB3 transcriptional profiles downloaded from the DeRisi Lab Malaria Transcriptome Database http://malaria.ucsf.edu/comparison/index.php[ 47].
In addition, we found that this problem could be overcome when we used correlation ranks instead of correlation values.
Using correlation matrix values between sperm numbers and sperm quality traits, we constructed a cluster diagram with single linkage-joining rule (distance metric = 1−r) to identify relationships between sperm traits.
Different versions of this method exist, such as one by Obayashi and Kinoshita (2009) that uses correlation ranks instead of correlation values.
They use a correlation value equal to 0.975 for all admixtures based on the manufacturer recommendation.
In our study, we use this correlation value as a means to describe the presence of the Core MYC signature in a given sample.
Specifically, we used average correlation values of 0.36, 0.47, and 0.62 for knowledge, attitude, and behaviour outcomes, respectively, and conducted a sensitivity analysis in each case by comparing to values of 0.2 and 0.8 to identify potential impacts on the outcomes using a range of possible values [ 31] (Additional file 4).
Using correlation analysis, we highlighted the value of using PROs to evaluate treatment benefit in patients with RA.
We use absolute correlation values, because the magnitude, rather than the sign, is of interest.
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