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One of the most commonly used breeds is the beagle.
However, the growth rate gains with antibiotic growth promotants are less significant with currently used breeds of swine and poultry (Wegener 2003).
Although some people feel that a wide range of dog breeds can be raised to protect livestock, the most commonly used breeds include: Akbash.
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The intra-provenance variation observed suggests that admixtures from different provenances should not be used (Breed et al. 2013), when sourcing seeds for restoration.
This was previously shown in beef breeds where using breeds with smaller sample sizes reduced the power to identify segregating loci [ 18].
Combined analysis of all four breeds was performed using breed as strata.
Using breed-specific allele frequencies is expected to give different results (e.g., [ 20]).
Hence, using breed-specific allele frequencies in constructing the GRM had a limited impact on prediction accuracy.
Here, the Wei and van der Werf [ 1] model is reformulated using breed-specific partial relationship matrices, as in Garcia-Cortes and Toro [ 20].
This means that for predictions based on intermediate marker density (50 k) and GBLUP, it is currently necessary to use breed-specific reference populations.
Recently, Makgahlela et al. [ 14] compared predictions using a genomic relationship matrix based on average allele frequencies across breeds with predictions using breed-specific allele frequencies in the Nordic Red dairy cattle population.
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