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First, we used BOTTLENECK [32] implemented by Cornuet and Luikart [33].
We compared this empirical value of M-ratio to the commonly used bottleneck threshold (0.68; Garza and Williamson 2001) as well as a simulated equilibrium distribution based on the two-phase model of microsatellite mutation.
We used BOTTLENECK version 1.2.02 (Cornuet and Luikart 1997) to infer recent reductions or expansions of effective population size in each sampled population, excluding Upper Hassayampa (UH) due to small sample size.
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In this paper, we presented two robust distant-talking speaker identification methods based on DNNs and using bottleneck and DAE features, respectively.
First, heterozygosity excess was tested using BOTTLENECK v.1.2.02 [ 40].
Results of bottleneck tests using bottleneck and M-ratio using 90% single-step mutations.
Finally, evidence of a recent bottleneck for each population was tested using BOTTLENECK 1.1 [ 47].
Multi-partners workshop was conducted to identify barriers and possible mutual solutions (using bottleneck analysis framework).
We tested for recent population bottlenecks in the three finless porpoise populations using BOTTLENECK v1.2.02 program (Piry et al. 1999).
We estimated the deviation of gene diversity from mutation-drift equilibrium at the local scale, using BOTTLENECK 1.2.02 [ 43].
Considering the locus limitations in data analysis using BOTTLENECK, particularly 40 UGMS loci having detected PIC ≥ 3.0 were selected.
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