Sentence examples for used blast from inspiring English sources

For example, the widely used BLAST [5] is computationally intensive but scales linearly with respect to the number of CPU cores.

Others used BLAST to compare metagenomes to the human reference genome [43], [44].

We then used BLAST (Evalue≤0.01) to assign Pfam families to all interactions of known 3D structure.

We used BLAST 2.2.6 [53] to search small RNAs that perfectly match the antisense strand of B. xylophilus ESTs.

JCVI used BLAST and Rfam to locate rRNAs, whereas IMG used an IMG RNA database and RAST used a script by Niels Larsen [16].

Wong and Hanner [18] used BLAST [51] and BOLD to identify market purchased seafood, including four presumed tuna samples, with mixed results.

We used BLAST [83] to compare each clone's nucleotide sequence to all transcripts contained in release 7 of the mouse KnownGenes track from the UCSC Genome Browser's database.

For protein homologies we used BLAST.

We used BLAST + (version 2.2.25) for all BLASTn [ 10] alignments.

We used BLAST for pairwise nucleotide alignment of the two draft genomes.

We used BLAST (E-values ≤ 10.0) as the primary search before performing InterproScan.