First, we used a previously published hERG1 Markov model [15] to reproduce the experimental data.
We used a previously published list of EWS- FLI1 regulated genes that were identified through shRNA inhibition experiments in A673 and SK-N-MC Ewing cell lines [37].
To test the utility of GCAT for microarray analysis, we used a previously published microarray data set of interferon stimulated gene expression in mouse embryonic fibroblasts [18].
We used a previously published Markov scheme for NaV1.1 [20] (see Text S1 and Figure S1 in the online supplement for details).
We used a previously published population model [8] to assess likely long-term trends in the numbers of condors in the absence of further releases and without chelation and other treatment of birds with elevated blood lead concentrations.
We used a previously published [8] discrete event simulation model developed with C++, reflecting MRSA transmission within hospitals, to estimate the health and economic outcome of screening and isolation.
In order to evaluate our GS models we used a previously published microarray data [23] which was derived from the skeletal muscle biopsies of 43 age-matched men with normal glucose tolerance (NGT, number of samples = 17), impaired glucose tolerance (IGT, N = 8), or diabetes type II (DM2, N = 18).
For the extraction of PrPTSE from muscle samples we used a previously published protocol [31] with modifications: 100 mg specimens of muscle tissue were cut into small pieces and washed twice in TBS (Tris-buffered saline [10 mM Tris-HCl, 133 mM NaCl, pH 7.4]).
To test whether the decrease in MYC transcription at ΔCTCF-NA alleles in a cell population correlates with an increase in DNA methylation in the promoter region, we used a previously published protocol to measure the level of methylation within three promoter regions of the MYC gene [21].
For this study, we used a previously published paradigm [ 14].
For the theme "clinical study", we used a previously published search strategy.
