Sentence examples for used a custom library from inspiring English sources

For heartbeat subtraction, analysis, and data display, we used a custom library of routines for optical imaging written in Java (Sun Microsystems, USA) and Mathematica (Wolfram Research, USA), with supplements in Matlab (Mathworks, USA).

We used a custom library of TE consensus sequences as identified above from each taxon to mask the respective filtered data set with RepeatMasker.

RepeatMasker masked the repeat elements in the newly assembled genome using a custom library.

To identify transposable elements at the DNA level, Repeat Masker was applied using a custom library based on Repbase.

DOI: http://dx.doi.org/10.7554/eLife.01812.010 > To find out whether we could inhibit SAS-6 oligomerization, we conducted a small-scale fragment screen using a custom library of halogenated fragments (HEFLib) (Wilcken et al., 2012).

To delineate various repetitive elements present in the C. floridanus genome, RepeatMasker v 4.0 [ 102] was applied using a custom library comprising a combination of Repbase library [ 32] and the de novo repeat library customised for the C. floridanus genome constructed with RepeatModeler [ 103] with default parameters.

We used a custom GeneChip library file (CDF) based on Refseq target definitions (Hs133P REFSEQ Version 8) to provide accurate interpretation of GeneChip data (Dai et al, 2005).

We used a custom 'library' of 1,907 human transcription factor (TF) binding motifs to identify TF motifs enriched in a 'positive' set of sequences (those with DNA methylation changes), compared to a 'negative' set (a matched set of sequences without DNA methylation changes).

Consensus sequences for each of the reconstructed piggyBac-like families were used to create a custom library for a local installation of RepeatMasker.

Additionally, a pilot screen using a commercial whole genome shRNA library identified targets in the ubiquitylation pathway (data not shown), and we therefore performed a parallel experiment using a custom designed library of shRNAs directed at ∼1,000 target genes encoding mouse proteins with a function in ubiquitylation/sumolyation.

First, to construct a custom silkworm repeat database for use as a custom library file of the RepeatMasker program [ 35], we extracted silkworm repeat-related sequences enrolled in NCBI-GenBank (Release 152.0) [ 36] with a custom Perl script.