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To address the mechanism of action of CGs on JAK2 protein levels in an unbiased manner we used a compendium of mRNA signatures derived from cell lines exposed to 1309 compounds, including CGs [24].
In addition, we used a compendium of gene synonyms and aliases to improve recall.
We used a compendium of gene expression experiments in which various chromatin modifiers were deleted or mutated [ 13].
We used a compendium of 759 Affymetrix E. coli Antisense2 arrays uniformly normalized with RMA to serve as input to the algorithm.
We used a compendium of gene expression experiments in which various ATP-dependent chromatin remodelers were deleted or mutated [ 30] (Additional file 1).
We used a compendium of breast cancer microarray studies curated for the meta-analysis of Haibe-Kains et al. (2012) and available as supplement to their article.
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Most opera companies today (including the Metropolitan) use a compendium of the versions that Mozart wrote for performances in 1787 in Prague and 1788 in Vienna.
Using a compendium of cell-state-specific gene expression data, we identified genes that uniquely define cell states, including those thought to represent various developmental stages.
Using a compendium of microarray gene expression data obtained from Escherichia coli, we constructed a series of Bayesian network models for the reactive oxygen species (ROS) pathway as defined by EcoCyc.
Using a compendium of microarray gene expression data from the M3D database [30], networks were constructed for the 27 genes contained in the ROS pathway as defined by the EcoCyc database [1] (Figure 2).
Each activity was then assigned an energy expenditure value using a compendium of physical activity energy costs.
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