Sentence examples for use the transcriptomic data from inspiring English sources
These data allow us to use the transcriptomic data from our previous study [4] to relate mRNA targets with the miRNAs identified in this study.
We used Mapman10 web-tool to visualize the metabolome changes in Malus X domestica due to biotic stress by using the transcriptomic data of the 7 datasets.
Using the transcriptomic data, we compared our model predictions with measured lipid changes.
Step 2: FVA upper and lower bounds for the unregulated model are multiplied by the fold change value (c j ) obtained using the transcriptomic data.
Using the transcriptomic data, we identified hemolymph peptides and proteins induced upon immune challenge by 2D-gelelectrophoresis combined with mass spectrometric analysis.
To identify relevant transcriptional variation in the context of aroma compound production, PCA analysis and PLS1 and PLS2 models were constructed for the compounds in tables 2, 3, 4 using the transcriptomic data as X variables.
Where multiple protein products were identified from a single gene the correlation was calculated using the transcriptomic data for that gene versus proteomic data for each individual protein spot (i.e. multiple spots were not averaged or summed), because of the possibility that not all spots for any one gene product were detected.
Regulatory constraints on the iCac802 model were imposed using the transcriptomic data from Wang et al. [ 3] in the form of modified reaction flux bounds for each of the stress conditions using the CoreReg method (see Methods section for full description).
Using the transcriptomic data describing uterine gene expression during chicken eggshell calcification [ 19] and by analogy with mammalian ionic transporters, a general model for ion transfer across the uterine tubular gland cells during eggshell formation suggested the involvement of 31 genes and related proteins [ 23].
In general, the other models in addition to the use of the transcriptomic data alone regardless of the model, performed poorly in the generalizability assessment (Additional file 5: Figures S2 and Additional file 6: Figure S3).
(a) Base quality using Phred scores for the transcriptomic data using F2-1 as a representative sample.
