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Using the toolbox makes implementing EAF technically feasible for all fisheries irrespective of their value or the level of resources and data, but impediments including insufficient institutional, stakeholder and political commitment may still affect its adoption in some locations.
Additional file 5 describes the metrics of climate, atmosphere, geology, topography, and land use and land cover features that have been generated for LAGOSGEO using the toolbox.
We use the Matlab toolbox for Petri nets [ 24] to calculate the minimal P- and T-invariants using the algorithm of Martinez and Silva [ 25].
Mean signal intensities (in arbitrary units) were calculated for all conditions using the MARSBAR toolbox for SPM for several regions of interest that showed activation differences between the task conditions.
For each participant, the EPI images were corrected for motion using the INRIalign toolbox for SPM2 (http://www-sop.inria.fr/epidaure/software/INRIAlign/).fr/epidaure/software/INRIAlign/
Iterative model improvement and individualization (i.e., parameter identification) have been conducted using the MoBi Toolbox for MATLAB in combination with MATLAB (optimization toolbox).
The columns represent the 12 features extracted using the Ledalab toolbox for MATLAB (see Technical Validation for more information on the features extracted).
We used the MarsBaR toolbox for analysing responses within the overlapping voxels for the permanence and memorableness factors.
For regions of interest, contrast parameter estimates (for each condition versus rest) were extracted using the MarsBar Toolbox for SPM [Brett et al., 2002].
We have used the symbolic toolbox for Matlab in our examples with a good result for all matrices tested.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com