Sentence examples for use the sequence alignment from inspiring English sources

We use the sequence alignment algorithm Blastclust [ 28] to cluster protein sequences into mutually exclusive groups.

Nucleotide sequences were aligned using the sequence alignment program Clustal X [ 58] and were checked manually.

The mtDNA sequences were edited using the sequence alignment editor BioEdit 7.0.5.3 (Hall 1999) and aligned using the program Clustal X (Larkin et al. 2007).

Reads were aligned to the UCSC reference human genome assembly (hg19) using the sequence alignment software BWA version 0.5.10 [ 71] using the default parameters.

The final alignments were manually inspected and edited using the sequence alignment editor SE-Al version 1.d1 software [43].

Models were manually refined with ViTO [23] using the sequence alignment of AmVKR, AgVKR, TcVKR, SpVKR and SmVKR.

MODELLER used the sequence alignment from the Meta Server and the template PDB structure (1Q7F for Q03601 and 1D4X for Q20329) to generate five different homology models.

Amino acid variants of CSM and SAP were transferred onto the positions of their corresponding UniProt sequence using the sequence alignment program, BL2SEQ, of NCBI blast package [49] if necessary.

Models were manually refined with ViTO [ 44] using the sequence alignment of the rat mGluR1 VFTM.

MtDNA COI partial amino acid sequence alignment was also carried out using the sequence alignment program Clustal X.

The resulting multiple alignments were visualized and annotated using the sequence alignment protocol in CLC sequence viewer (CLCBIO, Aarhus, Denmark).