Sentence examples for use the go database from inspiring English sources

To test this hypothesis, we use the GO database [ 22] as a source of annotations of biological processes.

After annotation using the GO database, successfully annotated genes could be categorized into 47 sub-groups from three main categories (biological process, cellular component and molecular function) (Additional file 3: Table S3).

Transcripts with changed expression ≥1.5-fold and an adjusted p < 0.01 were considered significantly regulated; association to biological process was performed using the GO database with a p value cutoff of <0.05.

Transcripts with changed expression ≥1.5-fold and an adjusted p < 0.01 were considered significantly regulated; association to biological process was performed using the GO database with a p value cutoff of <0.05 Fig. 6 Expression of genes associated with cell cycle regulation.

To investigate the properties of identified proteins, the 1557 identified proteins were classified based on the cellular location or biological process of the protein using the GO database (Figure 1).

The DEGs were also annotated using the GO database, and the numbers of DEGs in each GO term were calculated.

Procedures using the GO database [ 40] and perl API [ 41] were developed to classify specific GO terms into general categories described by higher level terms.

Genes from a comparison of two prototypes which significantly distinguish the clusters are annotated for biological function and process es) using the GO database [ 46, 47].

To take a broad and unbiased approach, we used the GO database, a curated set of terms describing known properties of the protein product of a gene.

The significant GO terms were grouped into hierarchical functional clusters using the GO database structure, which allows the search for interrelated GO terms and, moreover, provides information about their degree of relation.

Using the GO database (http://www.geneontology.org/) and Onto-Express analysis [ 18], the involved genes were classified in order to gain an overall picture of potential functions of the differentially expressed genes in this study.