CLC that uses the De Brijun algorithm was used to assemble the cDNA sequences of lily and tulip [ 24].
Finally the yarn strength prediction model was trained using the DE-ELM algorithm.
Velvet [ 7] is one of the earliest assemblers using the de Bruijn graph algorithm.
Trinity generates transcriptome assemblies from short read sequences using the de Bruijn graph algorithm.
The remaining unannotated reads were pooled and assembled into contigs using the de novo assembly algorithm of Genomics workbench.
Following the QC steps, de novo assembly of high quality reads was carried out using the de novo assembly algorithm within the CLC genomics workbench.
Our default installation offers three commonly used assemblers: Velvet [ 7 ] is one of the earliest assemblers using the de Bruijn graph algorithm.
The five SAGs Velvet assemblies were then merged and co-assembled using the de novo assembly algorithm implemented in Geneious (Biomatters Ltd ,Auckland NZ).
The D. suzukii genome was de novo assembled by SOAPdenovo2 (Li et al. 2010), a short-read assembly method that uses the de Bruijn graph algorithm to simplify the task of assembly and to reduce computational complexity.
High-throughput genome sequencing was performed using a HiSeq 2500 machine (Illumina, San Diego, CA), and the 100 bp short read paired-end data was assembled using the de novo assembly algorithm, Velvet (Zerbino and Birney 2008; version 1.2.08).
