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We use the DAVID database [ 17] for the GO term enrichment analysis.
In this work, we use the DAVID database [ 22] for the GO term enrichment analysis on the H. sapiens proteins involved in host-pathogen PPIs predicted by our stringent homology-based approach and the conventional homology-based approach.
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Next, GO analysis using the DAVID database was performed to analyze 63 (8 + 26 + 29) genes found only in patients with IBD in terms of biological processes, molecular functions, and cellular components (Fig. 3).
Functional clustering was performed using the DAVID database.
Statistical significance of Gene Ontology overrepresentation were determined by hypergeometric distribution using the DAVID database [16] and Ingenuity Pathway Analysis [17].
We submitted the 1011 differentially expressed genes into gene ontology (GO) groups using the DAVID database (http://david.abcc.ncifcrf.gov) for cluster analysis according to Gene Ontology (GO) terms with medium or high classification stringency.
We performed an enrichment analysis of target gene lists predicted for all significantly deregulated miRNAs using the DAVID (Database for Annotation, Visualization and Interrogated Discovery) bioinformatics database [22], [23].
To identify families of genes that might have significant roles related to specific biological or molecular processes, we used the DAVID database to annotate the 6124 probes and categorize them by function.
Functional enrichment was assessed using the DAVID database (http://david.abcc.ncifcrf.gov/).abcc.ncifcrf.gov/
Functional enrichment of each module was verified using the DAVID database (p-value < 0.1) [ 45].
A. Panther In our previous studies, we performed pathway analysis using the DAVID database.
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