Sentence examples for use the blast alignment from inspiring English sources

We use the BLAST alignment e-values to compute αb.

Our method was also compared to one based on global sequence similarity, using the BLAST alignment bitscores as illustrated in Materials and Methods.

Each sequence was annotated using the BLAST alignment with the lowest expected value (≤ 1 × 10-6) in those alignments where the reading frame was in the positive orientation.

A script written with the BioPerl toolkit [ 70] was used to parse the BLAST output files for sequences that did not have any matches, or sequences with only weak matches using the criteria: (E-value ≥ 0.01), or (Percent Identity < 50%), or (<50% of the query length was used in the BLAST alignment).

Initially, two EST pools and all Reference sequence project (Refseq) [ 21] mRNA sequences were aligned to the human genome using the BLAST like alignment tool (BLAT) [ 22].

The U133A array contains probe sets which recognise 16 S100 genes (S100A1-S100A14, S100β and S100P), for which probe sequence identity and specificity could be verified using the BLAST sequence alignment tool (http://www.ncbi.nlm.nih.gov/BLAST/).nih.gov/BLAST/

Annotated potato loci (PGSC0003DMG40*******) corresponding to the genes were obtained using the BLAST sequence alignments tool in (http://potato.plantbiology.msu.edu/integrated_searches.shtml).shtml

It is important to keep in mind that because of the different methods used in calculating the pairwise genome identities, the demarcations obtained using the BLAST-based alignment could be different from those obtained using the global alignment and would be more likely different from those determined by other algorithms using different datasets and/or different genome regions.

Furthermore, human orthologous genes were identified by aligning pig gene-associated regions against the human genome using the BLAST-like Alignment Tool [ 53].

To accomplish this, we downloaded the entire list of the 1,464 intact L1 elements from the L1Xplorer database (Ens24.33) and aligned them with the full UCSC mouse genome (freeze March 2006, NCBI Build 35, UCSC mm8,) using the BLAST-like alignment tool (BLAT) to generate the genomic location of all active mouse L1 elements.

There are still overlaps between the green, yellow and peach bars in the plot using the BLAST-based alignment.