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For instance, one may use the absolute distance, the Euclidean distance or Kullback-Leibler divergence computed from oligo nucleotide frequencies.
We have finally decided to use the absolute distance, which is computationally the simplest among all the distances considered.
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In the following section, we have presented results obtained using the absolute distance based on tetra-nucleotide frequencies.
The same calculation was repeated using only the absolute distance based on the first two PCs per descriptor set (in other words changing Z-Scales (3) to Z-Scales (2) and so forth), we will refer to this calculation as limited PCA analysis.
The variation of structural morphological characters was visually checked based on a multiple scaling analysis performed in XLSTAT 2007 (Addinsoft, Paris) using the absolute morphological distances calculated from the original data in PAUP*4.0b10 [ 42] (Additional file 5).
Displacement at the SCO was calculated using the change in the (absolute) distance between the measuring points per loading cycle.
We cannot directly use these data to calculate the absolute distance because the measured time contains circuit delay.
Attempts to use 1H spin diffusion to fix the absolute distance scale were unsuccessful since the results indicated a heterogeneity with not all of the soft segments contributing to a simple two phase hard/soft domain morphology.
The fragment is selected based on the absolute distance, and this tends to cause the problem, i.e., the blurring artifacts, similar to that caused when using the MSE-based distance.
For the arrangement of the rows and columns of the plotted matrix, we use the sum of the absolute distances between the rows and the absolute distances between the columns of (Q d ′, d diff ) d ′, d = 1, …, D for complete linkage clustering (see for example [ 34]).
He wanted the absolute distance record.
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