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Our implementation is compatible with a range of architectures; crucially it enables the use of this wrapper with the BlueGene/Q architecture, in addition to the x86 architecture.
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In fact, χ-IRG-DC is a hybrid filter-wrapper models that take advantage of the simplicity of the filter approach for initial gene screening and then make use of the wrapper approach to optimize classification accuracy in final gene selection [ 38].
The advantage of using this wrapper script is that it automatically creates two map projects, one comparing the sequences at the DNA level using blastn searches, and one comparing the CDS feature translations using blastp.
Sybil's optimisations make use of wrapper functions (in this case through the R package glpkAPI [ 42]), allowing access to the C-API of the mathematical programming software from within R. This combines very short running times with flexible communication with the solver software.
The ultimate utility of this wrapper is to use the Annotator in more elaborate pipelines where the generated semantic annotations are used as input to downstream processing, for instance to help identify complex relationships between biological entities.
The frameworks design does extensive use of the adapter (wrapper) design pattern to ease the incorporation of new data acquisition channels at the data acquisition layer and new data and remote control services in the external interaction layer.
As seen in Figure 2, the use of both the Wrapper and the Relief feature selection algorithms results in falsified measures of classifier performance.
Using this wrapper an automated constrained docking workflow was implemented and used to analyze the performance of this approach in comparison to pharmacophore mapping-based virtual screening.
Using this wrapper in combination with other UIMA tools will involve some adaptation between type systems.
There was also "incorrect use" of wrappers and fasteners, representing "serious and unacceptable failures," the agency said.
The metadata for the components to be integrated is used to adapt and enhance the black-box components through the use of wrappers.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com