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For deployments where the gateway node has sufficient processing power, constrained wireless nodes can be relaxed by the use of sequence numbers for transmitted packets.
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In the phylogenetic tree, we opted to use a suffix of sequence number (or only the sequence number) for each X. tropicalis receptor gene.
Combined graphs are a good alternative to enrichment analysis because they don't require a reference group and allow the use of small numbers of sequences [ 74].
Importantly, the use of large number of sequence data for MLSA allowed good resolution of relationship between the six species, despite evidence of recombination within some of the sequences used for the analysis.
If we are to make use of the increasing numbers of genome sequencing projects to improve our understanding of TE biology, we will need an efficient, automatic de novo approach for the annotation of genome TE content.
The statistical coupling analysis requires the use of a large number of sequences as well as structural models for a representative member of the protein family to be analyzed [ 6, 7].
This demonstrates the ability of WG-FAST to use low numbers of sequence data to accurately genotype samples, where other methods may require additional data.
We previously showed a possibility to derive a scale of developmental potency from the global gene expression (transcript) profile data, but the data could not be that quantitative because of the use of a limited number of expressed sequence tags (ESTs) for the analysis.
However, only the use of an increasing number of fully sequenced individual genomes in combination with genomes of closely related species will allow a more complete test of this hypothesis.
For 4,297 (51.0%) of the annotated CDS, a function could be automatically inferred using a number of sequence similarity based approaches implemented in the GenDB auto-annotator METANOR [ 16].
Previous studies have used the number of sequence reads of a particular miRNA from deep-sequencing as an indication of molecular abundance [ 42].
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