Sentence examples for use of sequence alignment from inspiring English sources

SiteHopper provides a powerful alternative method to the traditional use of sequence alignment for this purpose.

We introduce a new similarity measure, called LMS for Local Matching Score, to assess local similarity between sequences without the use of sequence alignment.

In a few cases, BLAST had alternative possible junction assignments due to its use of sequence alignment scoring as opposed to thermodynamic favorability.

There are also perceived challenges in the use of sequence alignment for phylogenetic analysis of NCS [ 9], as complex mutational processes (slipped-strand mispairing, stem-loop secondary structure excision/repair, minute inversions, intramolecular recombination) are prevalent.

For the sequenced Duroc sow 2 14, we downloaded its draft genome sequence (i.e. Sus scrofa 10.2 reference assembly) from ftp://ftp.ensembl.org/pub/release-67/fasta/sus_scrofa/dna/ and corresponding NGS data from DDBJ (ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/ERA009/ERA009086/) for the use of sequence alignment and SD map construction.

Through the use of sequence alignments and site-directed mutagenesis we identified a single amino acid position highly correlated with the potential to degrade p53.

Despite its efficiency, the use of sequence alignments to determine the position of stop codons resulted in several cases in overlapping genes.

Although this mode resulted in reduced prediction performance, it allowed us to observe an actual difference in the prediction outcome, which would have been disguised by the use of sequence alignments otherwise.

We used refined methods of sequence alignment, site selection, and time estimation to address these questions with protein sequences from complete genomes of prokaryotes and eukaryotes.

Introns were identified using comparisons of sequence alignments against the known mt genes of F. oxysporum and F. graminearum.

To measure the conservation of proteins, we find orthologous proteins in other species, instead of sequence alignment using BLAST.