Sentence examples for use of phylogenomic analyses from inspiring English sources

Use of phylogenomic analyses to address deep metazoan relationships has recently increased.

In this era of phylogenomic analyses, supermatrix methods are widely used.

The lancelet α-subunit-like sequence, united with vertebrate α-subunit and, based upon the results of phylogenomic analyses (Figs.

This allowed an accurate identification of orthologues, which is an essential step of phylogenomic analyses because orthologues are more likely to share the same function than paralogues [11].

RAxML nuclear gene trees were then used for phylogenomic analyses of all targeted loci with complete taxon sampling (n = 761) using the MP-EST species tree approach with bootstrap evaluation of clade support implemented through the STRAW webserver (Shaw et al., 2013).

The use of reference-guided assembly in the pipeline presented here, rather than the de novo approach of phyluce, also results in a greater amount of data recovery for use in phylogenomic analyses (Table 3).

Recently, Lombard and Moreira (2011) studied the origin and evolution of the MVA and MEP pathways using phylogenomic analyses of a taxon-rich sequence database and concluded that the MVA pathway was likely an ancestral metabolic route in all three domains of life.

The genes used in phylogenomic analyses were selected from sets of orthologs, identified as reciprocal best BLAST hits and validated through comparison with the COG database.

Using phylogenomic analyses of expressed sequence tag (EST) data generated from a clonal cell line of a free living dinoflagellate alga Karenia brevis, we investigated the impact of HGT on genome evolution in unicellular chromalveolate protists.

The chloroplast genomes of 63 green algal taxa were used in the phylogenomic analyses.

Genes derived through intradomain eukaryote-to-eukaryote HGT were extremely hard to identify using high throughput phylogenomic analyses due to the limited number of taxa included in our local database.