Before the use of phylogenetic analyses, Coeluridae and Coelurosauria were taxonomic wastebaskets used for small theropods that didn't belong to other groups; thus, they accumulated many dubious genera.
Research combining the use of phylogenetic analyses of DNA sequences and more traditional morphology-based characters has resulted in a reshuffling of the species concept in Gomphus; as a result, G. clavatus is currently considered the only Gomphus species in North America.
Phylogenetic relationship among raccoon MHC DRB exon 2 alleles were poorly resolved using both methods of phylogenetic analyses (Bayesian inference and K2P nucleotide distance); we therefore chose to only present the Bayesian tree as we concluded that the support for the branches were more accurate and reflective of the true phylogenetic relationships (Figure 1).
This study investigates the duplication characteristics of the PE and PPE gene families and their association with the ESAT-6 gene clusters, using a combination of phylogenetic analyses, DNA hybridization, and comparative genomics, in order to gain insight into their evolutionary history and distribution in the genus Mycobacterium.
We used here a combination of phylogenetic analyses of codon evolution and theoretical inferences of the impact of amino acid substitutions on protein structure and function to understand whether natural selection governed the evolution of mtDNA in hares, and to provide insights on the origins of the adaptation.
Here, we employ an array of phylogenetic analyses using a multiple gene tree approach to address several questions regarding the phylogenetic relationships of the North American cyprinid genus Richardsonius and two other closely related genera, Clinostomus and Iotichthys.
Much of the progress in establishing a nu ITS2 rRNA tool for diversity assessment, has been accomplished as a consequence of new bioinformatics applications, concepts and resources [35], [64], [65], [67], [70], [71].n particular, the ITS2 Database III has substantially advanced the effectiveness of phylogenetic analyses using ITS2 data.
We conducted multiple sets of phylogenetic analyses using different character partitions as described above.
The genome of F. nucleatum possesses a remarkable amount of patchiness with any kind of phylogenetic analyses used.
Recently, the taxonomy of Nosema has been extensively revised on the basis of phylogenetic analyses using the sequence of the small subunit ribosomal RNA (16S rRNA) gene.
A two-tiered approach of phylogenetic analyses using ML and Bayesian methods showed that Ericabatrachus is the sister group of Petropedetes, which is supported by limited morphological evidence.
