Sentence examples for use of pathway information from inspiring English sources

For example, most classification and regression methods for microarray data are based on the whole set of genes and have not made use of pathway information.

The WikiPathways web service could be used as framework for building data analysis tools that make use of pathway information.

The five limitations of current pathway databases that hamper effective use of pathway information have been overcome in this work.

As a resource of pathway information, we used data from the Molecular Signatures Database [ 12] that compiles pathway information from KEGG [ 21], Biocarta and Reactome [ 9].

However, in principle other sources of pathway information could be used.

For example, Rogers et al. (2009), Silva et al. (2014) and Weber and Viant (2010) all investigate the use of metabolic pathway information to improve metabolite annotation.

The strategy is centered on three interrelated issues: a) the use of toxicity pathways information in screening and prioritization of chemicals for further testing; b) the use of toxicity pathways information in risk assessment; and c) organizational transition.

Finally, mapping of pathways information from REACTOME, KEGG and WikiPathways have been implemented over protein networks using information of known pathways and sustained proteins connecting these pathways in a given network.

Furthermore, using the pathway information of ConsensusPathDB and performing Gene Set Enrichment analysis, we have found evidences of an enrichment of affected genes related to the Extracellular Matrix in DS studies (ECM-RECEPTOR INTERACTION, FOCAL ADHESION, INTEGRIN and INTEGRIN CELL SURFACE INTERACTIONS).

Using KEGG pathway information, 30 of the 51 PSGs could be associated to at least one pathway.

The performance of this baseline will indicate whether using raw pathway information without incorporating any biologically relevant coupling does well.