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Understanding the characteristics and appropriate use of different analysis methods is critical to conducting a well-designed DCE study.
Use of different analysis models and restricting analyses based on control of multiple confounding variables changed findings only slightly.
Another important source of variation in analysis of ChIP-chip and ChIP-seq profiles originates from the use of different analysis algorithms.
The prevalence of TMD symptoms in young subjects varies widely, due to inter-subject variation and the use of different analysis methods.
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A run contains one or several raw files which can be used as inputs of different analysis.
Occasionally, an integrated analysis environment, also commonly refered as an integrated analysis pipeline (e.g., [ 12- 17]), can be used to support the integrated execution of different analysis activities.
Therefore, use of two different analysis approaches using two different data preprocessing methods (none for NimbleGen, quantile normalization + smoothing for maxfour), and varying parameters for the NimbleGen peak determination, yielded qualitatively similar conclusions.
Two of the three trials with non-significant results were not published, and the third had significant results when published because of the use of a different analysis population and statistical method than those specified in the protocol.
In this paper, the use of different image analysis techniques is investigated for predicting alumina content of anode cover materials used in primary aluminum smelters.
Differences between our results and previous studies [1, 2, 7, 19], which demonstrated an association between RBC transfusion and infection, may be explained by the use of different statistical analysis methods.
Next, we investigated the influence of the use of different data analysis strategies to identify altered genes on the same data set.
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