Sentence examples for use of average nucleotide from inspiring English sources

The recent emphasis on the use of average nucleotide identity is also consistent with this view (Richter and Rossello-Mora 2009).

ClustalW [ 56] was used to calculate Average Nucleotide Identity (ANI) percentages comparing each of the P. larvae phage genomes.

The DNAsp package [25] was used to analyze the average nucleotide diversity of the MTC and interspecies Ka/Ks tests.

MEGA5.0 (Tamura et al. 2011) was used to calculate the average nucleotide composition of 1) all codon sites, 1st + 2nd codon sites and 3rd codon sites and 2) intervals of increasing length (250 bp) beginning from the most varied end of the OV-sorted alignment.

The calculations of the average nucleotide diversity, the estimation of the population mutation parameter, and the test for neutrality (Tajima's D) were performed using Arlequin v3.5.1.2 [ 27].

Genomes were sequenced using Illumina technology with median coverage of 258-fold average nucleotide redundancy (supplementary fig. S1, Supplementary Material online).

Reads that did not pass a quality threshold score of 20 those with average nucleotide misread probabilities below 1%—were removed using the default Bioscope (v1.3) parameters.

Average nucleotide identity of 95% or more defines a species when using MLSA [29].

Others have proposed that average nucleotide identity (ANI) of less than 95% in the alignment of two whole-genome sequences can be used to differentiate species [ 85, 86].

aThe average nucleotide frequencies in the genomic regions were used.

Average nucleotide variant counts (N scores) were calculated for each of the 17 primer sites for each year after 1988 using the data from the genome dataset.