Sentence examples for use an alignment of from inspiring English sources

The HMM approach use an alignment of the entire genome and scan the alignments in small windows, while the approach can treat only three species.

In the second module, students use an alignment of five Yersinia pestis genomes to analyze single-nucleotide polymorphisms of three genes to classify strains into biovar groups.

The primers and the probe were designed using an alignment of 235 Type 1 (including all subtypes) and Type 2 PRRSV strains.

Methods: Using an alignment of 177 genomes of orthohepadnaviruses from GenBank, we selected a primer pair from a highly conserved region, corresponding to hydrophobic transmembrane domains of the major surface protein of HBV.

For the design of the degenerate primers, we have used an alignment of only one lepidopteran FMO (TjSNO) and of four FMOs from two dipteran genomes.

The coiled coil profiles were constructed using an alignment of several amino acid sequences corresponding to the known coiled coil domain.

Using an alignment of FMO sequences of D. melanogaster, A. gambiae, and T. jacobaeae for degenerate primer design, we have been able to identify five full-length cDNA sequences of arctiid FMOs (Table 1) in addition to several sequence fragments.

Using an alignment of SNO of T. jacobaeae and of FMO-like sequences of the dipteran species D. melanogaster and Anopheles gambiae, we have been able to identify several new FMO sequences of arctiids and other Lepidoptera.

Bayesian phylogenetic trees were estimated using an alignment of the 11 full length DRA transcripts shown in Supplementary Figure S1 combined with the 33 DRA exon 2 sequences shown in Supplementary Figure S2.

All sequences were checked for cross-contamination via ViroBLAST [40] against published and local databases, and by observing that sequences from each subject clustered separately from every other subject in a Jukes-Cantor phylogenetic tree calculated in Seaview [41] using an alignment of all sequences from all subjects.

For this reason, we used an alignment of several experimental structures to optimize our alignments.