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We use a mutation rate of 10-5.
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The NSGA-II algorithm, in turn, used a mutation rate of 1/population size, crossover rate of 0.9, and population size of 200 individuals.
We used a mutation rate of 5.5×10−7 mutations per site per year for the hypervariable region, based on a pedigree study in Adélie penguins [21], as well as the phylogenetic estimate of 2.1×10−7 mutations per site per year.
We used a mutation rate of 2% per Myr [31] with a generation time of 2 years, based on age of first breeding for most insectivorous bat species [32].
Each simulation used a mutation rate and recombination rate of 10−8 per bp per generation.
Both predators and scavengers selected after evaluation are subject to point mutation, using a mutation rate μ per element and a gross chromosomal rearrangements GCR) rate per genome.
However, in order to achieve appreciable sequence evolution on a laboratory time scale, we used a mutation rate that sometimes produced multiple mutations in a generation.
We used a mutation rate of 2.5 × 10−8 (Nachman and Crowell 2000) and a recombination rate of 10−8 (i.e., 1 Mb = 1 cM).
For our calculations of Ne, we used a mutation rate of μ = 5.56 × 10−4, a common value for microsatellites (Whittaker et al. 2003; Yue et al. 2007).
We used a mutation rate for spoligotypes of 0.039 events per year computed from previous estimates in the literature [ 14, 29].
We used a mutation rate of 20% per million years (Myr) in our study, which was previously applied to bats of the genus Nyctalus [ 53].
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