Sentence examples for use a multiple sequence from inspiring English sources

These studies use a multiple sequence alignment to represent the evolutionary history of a protein, gene, chromosome, or genome.

All the sequences aligned to the same cluster were visualized using a multiple sequence alignment program.

Using a multiple sequence alignment generated with the MUSCLE algorithm [23] (Fig. S1), the natural sequence variability of individual amino acid positions was assessed for the 50 lysozyme orthologs.

Using a multiple sequence alignment of nsp4 from representatives of the genus Coronaviridae, together with TMHMM and Tmpred predictions from the primary sequence, we successfully designed the construct of this highly conserved hydrophilic domain of MHV-A59 nsp4.

Using a multiple sequence alignment of the transmembrane (TM) domains, we calculated the mutual information between all inter-TM pairs of aligned positions and ranked the pairs by mutual information.

Using a multiple sequence alignment it is possible to identify amino acids that co-occur among homologous sequences.

We used a multiple sequence alignment that includes both the homeodomain and the additional conserved domains (Additional file 2).

Then, sequences were compared using a multiple sequence alignment tool (www.ebi.ac.uk/Tools/msa/clustalw2/) in order to find differential sequences for each insertion.

Putative gene relationships and sequence data were analyzed by using a multiple sequence alignment created by using Clustal W version 1.82 (18 ).

Multiple alignments of individual RPs or mega-sequences of SSU, LSU and all RPs were obtained using a multiple sequence alignment editor BioEdit version 7 [ 69].

These million proteins were analyzed using PONDR® VL-XT disorder predictor and regions of sequence corresponding to domains were aligned using a multiple sequence alignment tool.