The usage of the CEF can be seen in Section 'Usage of the Code Execution Framework within different PSEsFramework within different PSEs.́ In Section 'Code Execution Framework (CEF) concept' the CEF is specified and all involved components are defined.
With over 16 million particles per core, special effort was needed to optimize the memory usage of the code because the simulation was limited by memory resources.
We have implemented Monte-Carlo methods [35] calculating PI in MATLAB, R, and Octave as shown in Section 'Usage of the Code Execution Framework within different PSEs'.
It is argued that copyright is put to novel use here: claiming their rights, authors write 'open source licenses' that allow public usage of the code, while at the same time regulating the inclusion of users.
Codon usage bias (CUB) is usually defined as a species-specific deviation from uniform codon usage in the coding regions of genomic sequences.
For example, optimization of codon usage within the coding sequence, by incorporating codons for the most abundant isoaccepting tRNA, is known to increase expression (Ikemura 1985).
For the heterologous secretory production of single isoenzymes in P. pastoris, the codon usages of the coding sequences were optimized for efficient translation, and fragments corresponding to the predicted mature isoenzymes were produced synthetically.
The code usages of orthologous gene pairs were analyzed using cusp software (Alan Bleasby, [email protected]).
Furthermore, the code usages of these 3,368 orthologous pairs between two aphid species were also analyzed by using cusp software (Alan Bleasby, [email protected]).
Especially, we have analyzed dinucleotide and codon usage patterns in the coding regions of vertebrate and invertebrate organisms as well as in Flaviviridae viruses which specifically infect one or both host types.
