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Thus, at first, we decided to evaluate the contribution of mutation and nonmutational factors in shaping synonymous variability by using classical codon usage indexes.
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The values of the cow comfort index, cow stress index, and stall usage index (SUI) were calculated.
Our first goal was to use alternate methods, including phylogenetic reconstruction of prokaryote homologous gene families and calculation of two codon usage indices to complete the list of genes acquired by HGT.
Prostheses usage indices are shown in Figure 1.
These values were then correlated with bimanual usage index scores for these participants.
All other codon usage indices mentioned above were calculated using CodonW program [ 27].
Thus to evaluate codon bias, codon usage indices were measured among the single copy genes.
One codon usage index is the codon adaptation index (CAI) [ 36] which was determined using the codonW programme [ 37].
Specifically, the null distributions, assuming no correlation between inter-hemispheric connectivity and bimanual usage index scores, was constructed by randomly shuffling the participants' inter-hemispheric connectivity levels and correlating these with the unshuffled bimanual usage index scores.
Some in fact do show deviant codon usage indices suggesting a more recent acquisition compared to the other cases.
Among all the traditional amino acid usage indices variables, the isoelectric point distribution of the two groups show the most significant difference in them.
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