The CodonW v. 1.4.4 software (http://bioweb.pasteur.fr/seqanal/interfaces/codonw.html) was employed to calculate the codon usage indices of each L. (L).
Our first goal was to use alternate methods, including phylogenetic reconstruction of prokaryote homologous gene families and calculation of two codon usage indices to complete the list of genes acquired by HGT.
KPIs are measures of utilization indices (of "input usage" expressed as a ratio of the actual input of sources to some normative value), production indices (of "transformational efficiency" expressed as input/output ratio) and effectiveness indices (of quality of process output expressed as a ratio of the actual quality achieved to some norm).
The values of the cow comfort index, cow stress index, and stall usage index (SUI) were calculated.
The previous studies suggest that CAI index correlates better with expression level of a gene than other codon usage indices, such as the effective number of codons, codon bias index, the frequency of optimal codons, intrinsic codon bias index, maximum likelihood codon bias, synonymous codon bias orderliness, and measure independent of length and composition (MILC), etc.
Among all the traditional amino acid usage indices variables, the isoelectric point distribution of the two groups show the most significant difference in them.
Prostheses usage indices are shown in Figure 1.
Correlations between codon usage variations amongst indices of codon usage were carried out using the multi-analysis software SPSS Version 22.0 (SPSS Inc. software, Chicago, Illinois, USA) and GraphPad Prism 5 (GraphPad Software, San Diego, California, USA).
Simple reporting index (RI) values for systemic hypersensitivity reactions were calculated from AERS data and usage to produce the index of adverse event reports per million shipping units of drug.
Capture the most prevalent tags by eliminating from the vocabulary those whose index of usage (see Section 2) is below the mean.
In addition to this textual data, numerical data for each list were obtained that showed the number of times a tag had been used (index of usage) up to the point when the tags were retrieved.
