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In spite of these limitations, some studies have reported usable gene expression data from FFPE specimens with conventional microarrays technologies [3], [5] [7].
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FlyUI, a library of JavaScript widgets providing re-usable user-interface components for Drosophila gene expression data, is available at http://flyui.googlecode.com.
Gene expression data for Growth arrest and damage-inducible gene 45 (Gand45α) and Cyclin-dependent kinase inhibitor 1A (CDKN1A/p21CIP1) were selected to elucidate the influence of normalization by using appropriate and inappropriate internal control genes.
Here, we have described an original software named TRAM, designed to create and analyze transcriptome maps for any organism, based on gene expression data in a general form and able to generate a relational, fully-indexed map database, usable on Macintosh and Windows operating systems-based computers.
40643_2016_125_MOESM2_ESM.xlsx Additional file 2. Gene expression data.
With current technology it takes a 16GB RAM desktop about 2 days to process gene expression data.
Figure 4 Flowchart of the CMap gene expression data analysis.
www.broadinstitute.org/cmap/ Gene Expression Omnibus (GEO Publicc repository of gene expression data.
The list of 1,583 gene loci and related gene expression data are presented in Table S1.
Second, we constructed a weighted gene network based on gene expression data (shortly called GENet).
The extracted voxels for each gene form a column of the gene expression data matrix.
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