Sentence examples for upstream window from inspiring English sources

For each region of interest, the total number of reads aligning to 5 codon windows immediately upstream and downstream of that codon were tabulated, and the ratio (downstream counts/upstream counts) plotted against the total number of counts in the upstream window.

These latter values would describe the occupancy of motifs in the upstream windows, in each simulation.

The occupancy of motifs in the upstream windows was then examined in the following way.

NCBI makeblastdb (version 2.2.25+) was run on all upstream windows for each target genome and on the pig repeat-masked genome to get the blast-formatted databases.

TFBS-ID showing δ > 0.2 between populations (5 KB window upstream of TSS).

The amount of Htz1 within a 150bp window upstream of TESs is displayed.

TFBS-ID description and associations for 5 KB window upstream of TSS.

In contrast, 21.4% of the genes that are downregulated and bound by SYT-SSX2 have peaks within a 0-20kb window upstream of the TSS.

DNA methylation datasets are region based and can be mapped onto genes by defining a window upstream and downstream of each gene's transcription start site.

Depending on whether the mapped read is located at the forward or backward strand we have to span the alignment window upstream or downstream.

The upstream donor site window MD1 spans the interval b - W don - 1 to b - 1 and is scored in the previous state.