Sentence examples for upstream of the transcript from inspiring English sources

Peaks overlapping with the ±1,000 bp region of a known transcription start site to -10 kb of the transcription start site were annotated as upstream of the transcript, and peaks that overlap with the ±1,000 bp region of a known transcription termination site to +10 kb downstream of the transcription termination site were annotated as downstream of the transcript.

Resequencing region included all HSPA8 exons and introns and 1 Kb upstream of the transcript start site.

Similar to PolIII transcripts, PolII transcripts also possess promoter sequences upstream of the transcript.

In the case of the putative PolII transcripts, the high-scoring PSEA elements preferentially locate 50 nts upstream of the transcript start.

No LEF-1 binding sites were observed in MMP-7 and ADAMTS-4 promoter in the region from 1,500 base pairs upstream of the transcript start to 100 base pairs downstream of the coding-sequence start.

For each of these genes, we scanned the region from 1,500 base pairs upstream of the transcript start to 100 base pairs downstream of the coding-sequence start to find putative LEF-1 binding elements (5'-CTTTGWW-3').

Some possible consensus regulatory sequences upstream of the transcripts have been suggested here, but further research is necessary to verify this hypothesis.

The region upstream of this transcript also contains a perfect match to the E. coli FNR consensus sequence (5'-TTGATnnnnATCAA) located at -41.5 with respect to the transcription start site.

The promoter sequences (5 kb) upstream of the transcription start site from transcripts of NHE1 and MnSOD were downloaded from NCBI http://www.ncbi.nlm.nih.gov using keywords NHE1 and MnSOD.

There is another CpG island (CpG 44) located 587-bp upstream of the transcription start site of this transcript.

We removed 2 additional ORs for which the cDNA/RACE sequences implied an unusual gene structure (an intron downstream of the ORF), leaving 432 intact ORs for which we assigned the furthest upstream base of the transcript as the TSS.