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Otherwise, for Rhodopsin family receptors that had a missing or truncated N-terminus in their closest structural template, we used a default truncation upstream of the beginning of helix I at BW position 1.19.
This corresponds to ~(24.5 25.5) and ~(28.2 29.5) kb upstream of the beginning of the white gene (R5.4).
Finally, we note that the position immediately upstream of the beginning of the mitochondrial trnH gug) gene the −1 position is G in all the jakobids.
In contrast, the regions upstream of the beginning of the first Cemar1 and downstream of the third Cemar1 show no significant similarity.
Both Sp1 sites are located upstream of the beginning of the novel transcript, while the polymorphisms c.131C>T and c.134C>A appear to be positioned a few bases downstream.
The 13 base pair sequence is located at -98 to -110 bases upstream of the beginning of transcription as defined by the NCBI reference sequence for FANCA (NM 000135.1 23-Dec 2003). 23-Dec 2003
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We included in our analysis of CpG sites that were located immediately upstream to the beginning of the island.
BOM24 had an eight-amino acideletionon which mildly reduced the hydrophobicity around the α-cleavage site (Fig. 3A,C), whereas BOM23 had a larger deletion extending upstream to the beginning of the HC and strongly reducing its hydrophobicity (Fig. 3A,C).
> -wrap-foot> The R1180P mutation is located 15 amino acids upstream to the beginning of the stalk region.
The W594R mutation is located only eight amino acids upstream to the beginning of the inter-domain bridge region.
To assess the allelic variation of individual KIR genes we similarly calculated their nucleotide diversity to an alignment of KIR sequences individually, each beginning 250 bp upstream of the start codon and extends throughout the gene to end at the polyadenylation site.
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upstream of the polyadenylation
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