Sentence examples for upper domain from inspiring English sources

An ATP-binding pocket is assembled mainly from structures of the upper domain, with minor contributions from the lower domain.

The assignment of helices in the VP5 upper domain was validated by comparison with the recently determined crystal structure of this region.

The other upper domain ontology for the life sciences, BIOTOP [40] was developed from the GENIA ontology [41] (see http://www-tsujii.is.s.u-tokyo.ac.jp/GENIA/home/wiki.cgi page=GENIA+Ontology).u-tokyo.ac.jp/GENIA/home/wiki.cgi page=GENIA+Ontology

In order to simulate the "strong" binding conformation, the upper domain of 1LKX (residues 132 159, 185 372, 526 548) was excised and structurally aligned to the upper domain in the strong binding conformation of myosin II [80].

The first difference was in the upper domain, close to the calcium ion.

The purpose of upper domain ontologies is to define the foundational kinds and relations relevant to the entire domain.

Nucleotide cleft closure is coupled, via rotation of the N-terminal subdomain, to opening of a 'docking cleft' on the opposite side of the motor domain and accompanying docking of the neck linker (A ), (B ), (D ), (E ) two different slices of density perpendicular to the microtubule axis, detailing the N-terminal and upper domains (respectively).

The analysis reveals two zones with distinctive morphologies: (1) an upper reach domain consisting of broad flat valleys and low-gradient streams where concave longitudinal profiles dominate and (2) a middle reach domain characterised by steep, deeply incised canyons where a convex long profile dominates marking a major kinckzone.

This observation suggests that in the inner Gaoping Slope west of the Gaoping Submarine Canyon, sediment deposition rate is higher than the basin subsidence rate, the topography of the upper slope domain there is "healed", and most sediments are overfilled in the slope basins now.

In the present study, we examined the interactions between CCR5 and novel CCR5 inhibitors containing the spirodiketopiperazine scaffolds AK530 and AK317, both of which were lodged in the hydrophobic cavity located between the upper transmembrane domain and the second extracellular loop (ECL2) of CCR5.

The trans model is the complex of the C-terminal fragment with the N-terminus that engages its DAD region (e.g., the upper FH2 domain with the lower N-terminus, Figure 5A).