Exact(25)
For transformers (things that take an AST, change it and return a updated tree) Falafel and Recast were mentioned.
The newly updated tree provides more specific grouping, most likely due to the better current annotation of the GH43 genes, as biochemical data have been reported for all proposed five phylogenetic groups after the previous tree was published.
18 publications which described additional (sub- haplogroups were consub- haplogroups an updated tree.
Age also added to the predictive capacity of the updated tree (nodes 13 and 14).
DOLLOP was rerun on this updated tree to reconstruct the final gene family configurations of the ancestral species.
The updated tree (Fig. 4) from this study is largely consistent with the previously published tree [ 18].
Similar(35)
> -wrap-foot> We are currently operating an instance of our framework as part of the iPlant collaborative (http://www.iplantcollaborative.org/) to maintain and make available perpetually updated trees for the Viridiplantae clade (using the rbcL, matK and atpB genes).
"Together with the construction of genetic maps and new sequencing technologies, we are working on an updated tea tree genome that will investigate some of the flavour". The researchers found that the leaves of the tea plant contain high levels of chemicals that give tea its distinctive flavour.
The authors could have updated this tree and use it as the reference species tree in their analysis.
Based on an updated phylogenetic tree, the available X-ray structures (MPO, LPO), biophysical and kinetic investigations, we analyse the evolution of structure and function of chordata heme peroxidases as well as their relation to other (multidomain) families of this superfamily.
The updated classification tree of haplogroup R0 and its sub-clades is shown in Figure 1 and Figure 2.
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