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We report an updated linkage map based on segregation analysis of more than nine hundred microsatellite markers in two doubled haploid gynogenetic lines.
Xia et al. reported an updated linkage map using AFLP, SSR, RFLP and STS markers and integrated the map with the previous one reported by the author's group.
Numerous independent studies have reported QTL pertaining to all of these traits using independent or updated linkage maps from different or the same segregating populations.
We performed a genome-wide search for epistatic interactions, using the updated linkage map, by fitting a regression model including two-locus interactions [ 20].
Further, we used a later updated linkage of our data sources for an evaluation of the risk of developing anal and perianal skin cancer following infection with HPV 16, 18, 33 and 73.
The data set used in this study is derived from a 2008 data extract that contains records for 272 074 people with diagnosed diabetes with an updated linkage of subsequent prescribing data in 2011.
We used these 798 markers plus 26 newly genotyped microsatellite markers to construct an updated linkage map, by using Mapmaker Macintosh 2.0 and Mapmaker/EXP 3.0 (Lander et al. 1987; Lincoln et al. 1992).
In our updated linkage map, 139 SSR markers were shared with the LGs described by Song et al. Most markers were in consensus order in both LGs, indicating a significant correlation (r = 0.6064, P < 0.01) between the length of the LGs in both maps.
The 1458 loci together with our previously published data were used to construct an updated genetic linkage map.
The updated genetic linkage map was generated with JoinMap 4.0 [ 81] with the Kosambi mapping function [ 82].
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